SIBiLS-Disprot services

Search by date range

This service provides a ranked list of MEDLINE documents for a curation request based on a specific date range.

The base URL is :

http://candy.hesge.ch/disprot/webservice/ranking/byDate/json?

Parameters

The following parameters are mandatory :

• axis : to define the thesaurus used for the curation (1|2|3|4), default is 1
• dateMin : minimum limit of the search, format is YYYY-MM-DD
• dateMax : maximum limit of the search, format is YYYY-MM-DD

The following parameters are available (optionnal) :

• excludedConcept : to list the identifiers of the non-relevant concept to filter out of the ranking strategy (e.g. "C2916,C9305" respectively to exclude the occurrences of "Carcinoma" and "Cancer" from the scoring)
• requested : to define the maximum number of retrieved citations, default is 50 and maximum is 2000

Thesaurus

Regardless of the selected axis, the thesaurus is always based on the ontology available on DisProt :

• 1 matches only the preferred forms
• 2 also covers synonyms
• 3 includes MeSH synonyms related to the DisProt concepts
• 4 is completed with additional concepts proposed by experts

Example

The following URL provides a list of publications published from December 30 to 31, 2019, ranked for their relevance to the 4th axis.

http://candy.hesge.ch/disprot/webservice/ranking/byDate/json?axis=4&dateMin=2019-12-30&dateMax=2019-12-31

Output

The output is provided in JSON format :

[ { "abstract":"Chronic Wasting Disease (CWD) is a [...].", "title":"In Vitro detection of Chronic Wasting Disease (CWD) prions in semen and reproductive tissues of white tailed deer bucks (Odocoileus virginianus).", "neXtA5Score":9.4, "pubDate":2019, "publicationId":"31887141", "statements":2 }, ... ]

Output fields for each document are :

• "publicationId" : the identifier of the retrieved publication
• "title" : the title of the publication
• "abstract" : the abstract of the publication
• "pubDate" : the publication year
• "statements" : the number of annotations found in the text
• "neXtA5Score" : the score provided by the SIBiLS-Disprot search engine, depending of the curation query

Processing full-texts

The triage service can also be applied to full-texts from PubMed Central. To query this collection, the base URL is :

http://candy.hesge.ch/disprot/webservice/ranking/PMC/byDate/json?

E.g. http://candy.hesge.ch/disprot/webservice/ranking/PMC/byDate/json?axis=4&dateMin=2019-12-30&dateMax=2019-12-31

Getting Help

You can contact us for questions specifically relating to this service.